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1.
Ann Biomed Eng ; 2024 Apr 28.
Article in English | MEDLINE | ID: mdl-38679660

ABSTRACT

The unacceptably high stroke rate associated with HeartMate 3 ventricular assist device (VAD) without signs of adherent pump thrombosis is hypothesized to be the result of the emboli produced by the inflow cannula, that are ingested and ejected from the pump. This in vitro and numerical study aimed to emulate the surface features and supraphysiological shear of a ventricular cannula to provide insight into their effect on thrombogenesis. Human whole blood was perfused at calibrated flow rates in a microfluidic channel to achieve shear rates 1000-7500 s-1, comparable to that experienced on the cannula. The channel contained periodic teeth representative of the rough sintered surface of the HeartMate 3 cannula. The deposition of fluorescently labeled platelets was visualized in real time and analyzed with a custom entity tracking algorithm. Numerical simulations of a multi-constituent thrombosis model were performed to simulate laminar blood flow in the channel. The sustained growth of adherent platelets was observed in all shear conditions ( p <  0.05). However, the greatest deposition was observed at the lower shear rates. The location of deposition with respect to the microfluidic teeth was also found to vary with shear rate. This was confirmed by CFD simulation. The entity tracking algorithm revealed the spatial variation of instances of embolic events. This result suggests that the sintered surface of the ventricular cannula may engender unstable thrombi with a greater likelihood of embolization at supraphysiological shear rates.

2.
Article in English | MEDLINE | ID: mdl-38545636

ABSTRACT

OBJECTIVE: The objective was to determine the effects of older age on hearing preservation after cochlear implantation (CI), and whether steroids improve hearing preservation in older animals. We hypothesized greater hearing preservation would be observed in (1) young animals compared to older animals and (2) older animals receiving steroids compared to no steroids. The secondary objective was to assess levels of fibrosis utilizing optical coherence tomography (OCT). STUDY DESIGN: Experimental Animal Study. SETTING: Laboratory. METHODS: Three groups of guinea pigs: young (YCI; 8.5 ± 0.5 weeks; n = 10), old (OCI; 19.1 ± 1.0 months; n = 9) and old + steroids (OCI+S; 19.1 ± 1.0 months; n = 9) underwent CI. The OCI+S group received a steroid taper over 7 days starting 2 days before surgery to 4 days after. Auditory brainstem response (ABR) measurements were performed preoperatively and postoperatively. OCT imaging was performed to assess cochleae for extent of fibrotic tissue growth in the scala tympani. RESULTS: The YCI group had significantly better hearing preservation as measured by smaller increases in ABR thresholds [mean shift: 2.79 ± 0.66] compared to the OCI group [mean shift = 12.44 ± 5.6]. The OCI+S group had significantly better hearing preservation [2.66 ± 1.50] compared to the OCI group. No significant differences was seen in fibrosis across groups. CONCLUSIONS: Young animals and older animals that received steroids had better hearing after CI than older animals not given steroids, but hearing preservation was not correlated with the level of fibrosis assessed using OCT. This work is the first to investigate differences in hearing preservation by age in an animal model, and supports the protective effects of steroids on hearing preservation in older individuals.

3.
Adv Mater ; 36(16): e2310599, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38300795

ABSTRACT

Intractable infected microenvironments caused by drug-resistant bacteria stalls the normal course of wound healing. Sono-piezodynamic therapy (SPT) is harnessed to combat pathogenic bacteria, but the superabundant reactive oxygen species (ROS) generated during SPT inevitably provoke severe inflammatory response, hindering tissue regeneration. Consequently, an intelligent nanocatalytic membrane composed of poly(lactic-co-glycolic acid) (PLGA) and black phosphorus /V2C MXene bio-heterojunctions (2D2-bioHJs) is devised. Under ultrasonication, 2D2-bioHJs effectively eliminate drug-resistant bacteria by disrupting metabolism and electron transport chain (ETC). When ultrasonication ceases, they enable the elimination of SPT-generated ROS. The 2D2-bioHJs act as a "lever" that effectively achieves a balance between ROS generation and annihilation, delivering both antibacterial and anti-inflammatory properties to the engineered membrane. More importantly, in vivo assays corroborate that the nanocatalytic membranes transform the stalled chronic wound environment into a regenerative one by eradicating the bacterial population, dampening the NF-κB inflammatory pathway and promoting angiogenesis. As envisaged, this work demonstrates a novel tactic to arm membranes with programmed antibacterial and anti-inflammatory effects to remedy refractory infected wounds from drug-fast bacteria.


Subject(s)
Bacterial Infections , Wound Infection , Humans , Reactive Oxygen Species , Kinetics , Anti-Bacterial Agents , Anti-Inflammatory Agents , Hydrogels
4.
Mar Drugs ; 21(12)2023 Nov 21.
Article in English | MEDLINE | ID: mdl-38132921

ABSTRACT

Ascomylactam C (AsC) is a new 13-membered-ring macrocyclic alkaloid, which was first isolated and identified in 2019 from the secondary metabolites of the mangrove endophytic fungus Didymella sp. CYSK-4 in the South China Sea. AsC has been found to have a broad-spectrum cytotoxic activity. However, the antitumor effects in vivo and mechanisms of AsC remain unclear. The aim of this study was to describe the effects of AsC on lung cancer and melanoma cells and to explore the antitumor molecular mechanism of AsC. In vitro, we used plate colony formation experiments and demonstrated the ability of AsC to inhibit low-density tumor growth. An Annexin V/PI cell apoptosis detection experiment revealed that AsC induced tumor cell apoptosis. In vivo, AsC suppressed the tumor growth of LLC and B16F10 allograft significantly in mice, and promoted the infiltration of CD4+ T and CD8+ T cells in tumor tissues. Mechanistically, by analyses of Western blotting, immunofluorescence and ELISA analysis, we found that AsC increased ROS formation, induced endoplasmic reticulum (ER) stress, activated the protein kinase RNA-like ER kinase (PERK)/eukaryotic translation initiation factor (eIF2α)/activating transcription factor 4 (ATF4)/C/EBP homologous protein (CHOP) signaling pathway, and induced immunogenic cell death (ICD) of tumor cells. Our results suggest that AsC may be a potentially promising antitumor drug candidate.


Subject(s)
Antineoplastic Agents , Lung Neoplasms , Melanoma , Mice , Animals , Lung Neoplasms/drug therapy , Lung Neoplasms/metabolism , Melanoma/drug therapy , Melanoma/metabolism , CD8-Positive T-Lymphocytes/metabolism , Immunogenic Cell Death , eIF-2 Kinase/metabolism , Endoplasmic Reticulum Stress , Apoptosis , Antineoplastic Agents/pharmacology , Antineoplastic Agents/metabolism , Mitochondria/metabolism , Transcription Factor CHOP/metabolism
5.
Molecules ; 28(24)2023 Dec 17.
Article in English | MEDLINE | ID: mdl-38138628

ABSTRACT

Zika virus (ZIKV) belongs to the Flavivirus genus of the Flaviviridae family, and is a pathogen posing a significant threat to human health. Currently, there is a lack of internationally approved antiviral drugs for the treatment of ZIKV infection, and symptomatic management remains the primary clinical approach. Consequently, the exploration of safe and effective anti-ZIKV drugs has emerged as a paramount imperative in ZIKV control efforts. In this study, we performed a screening of a compound library consisting of 1789 FDA-approved drugs to identify potential agents with anti-ZIKV activity. We have identified dapoxetine, an orally administered selective serotonin reuptake inhibitor (SSRI) commonly employed for the clinical management of premature ejaculation (PE), as a potential inhibitor of ZIKV RNA-dependent RNA polymerase (RdRp). Consequently, we conducted surface plasmon resonance (SPR) analysis to validate the specific binding of dapoxetine to ZIKV RdRp, and further evaluated its inhibitory effect on ZIKV RdRp synthesis using the ZIKV Gluc reporter gene assay. Furthermore, we substantiated the efficacy of dapoxetine in suppressing intracellular replication of ZIKV, thereby demonstrating a concentration-dependent antiviral effect (EC50 values ranging from 4.20 µM to 12.6 µM) and negligible cytotoxicity (CC50 > 50 µM) across diverse cell lines. Moreover, cell fluorescence staining and Western blotting assays revealed that dapoxetine effectively reduced the expression of ZIKV proteins. Collectively, our findings suggest that dapoxetine exhibits anti-ZIKV effects by inhibiting ZIKV RdRp activity, positioning it as a potential candidate for clinical therapeutic intervention against ZIKV infection.


Subject(s)
Zika Virus Infection , Zika Virus , Male , Humans , Zika Virus Infection/drug therapy , Selective Serotonin Reuptake Inhibitors/pharmacology , RNA-Dependent RNA Polymerase/metabolism , Antiviral Agents/therapeutic use , Virus Replication
6.
ASAIO J ; 69(1): 1-10, 2023 01 01.
Article in English | MEDLINE | ID: mdl-35649199

ABSTRACT

Titanium alloys have traditionally been used in blood-contacting cardiovascular devices, including left ventricular assist devices (LVADs). However, titanium surfaces are susceptible to adverse coagulation, leading to thrombogenesis and stroke. To improve hemocompatibility, LVAD manufacturers introduced powder sintering on blood-wetted surfaces in the 1980s to induce endothelialization. This technique has been employed in multiple contemporary LVADs on the pump housing, as well as the interior and exterior of the inflow cannula. Despite the wide adoption of sintered titanium, reported biologic response over the past several decades has been highly variable and apparently unpredictable-including combinations of neointima, pseudoneoimtima, thrombus, and pannus. We present a history of sintered titanium used in LVAD, a review of accumulated clinical outcomes, and a synopsis of gross appearance and composition of various depositions found clinically and in animal studies, which is unfortunately confounded by the variability and inconsistency in terminology. Therefore, this review endeavors to introduce a unified taxonomy to harmonize published observations of biologic response to sintered titanium in LVADs. From these data, we are able to deduce the natural history of the biologic response to sintered titanium, toward development of a deterministic model of the genesis of a hemocompatible neointima.


Subject(s)
Biological Products , Heart-Assist Devices , Thrombosis , Animals , Titanium , Pannus , Neointima/etiology , Thrombosis/etiology , Heart-Assist Devices/adverse effects
7.
Sci Rep ; 12(1): 19810, 2022 11 17.
Article in English | MEDLINE | ID: mdl-36396720

ABSTRACT

The prevailing theory of cochlear function states that outer hair cells amplify sound-induced vibration to improve hearing sensitivity and frequency specificity. Recent micromechanical measurements in the basal turn of gerbil cochleae through the round window have demonstrated that the reticular lamina vibration lags the basilar membrane vibration, and it is physiologically vulnerable not only at the best frequency but also at the low frequencies. These results suggest that outer hair cells from a broad cochlear region enhance hearing sensitivity through a global hydromechanical mechanism. However, the time difference between the reticular lamina and basilar membrane vibration has been thought to result from a systematic measurement error caused by the optical axis non-perpendicular to the cochlear partition. To address this concern, we measured the reticular lamina and basilar membrane vibrations in the transverse direction through an opening in the cochlear lateral wall in this study. Present results show that the phase difference between the reticular lamina and basilar membrane vibration decreases with frequency by ~ 180 degrees from low frequencies to the best frequency, consistent with those measured through the round window. Together with the round-window measurement, the low-coherence interferometry through the cochlear lateral wall demonstrates that the time difference between the reticular lamina and basilar membrane vibration results from the cochlear active processing rather than a measurement error.


Subject(s)
Basilar Membrane , Vibration , Animals , Basilar Membrane/physiology , Gerbillinae , Cochlea/physiology , Hair Cells, Auditory, Outer/physiology
8.
Hear Res ; 423: 108407, 2022 09 15.
Article in English | MEDLINE | ID: mdl-34922772

ABSTRACT

It is a common belief that the mammalian cochlea achieves its exquisite sensitivity, frequency selectivity, and dynamic range through an outer hair cell-based active process, or cochlear amplification. As a sound-induced traveling wave propagates from the cochlear base toward the apex, outer hair cells at a narrow region amplify the low level sound-induced vibration through a local feedback mechanism. This widely accepted theory has been tested by measuring sound-induced sub-nanometer vibrations within the organ of Corti in the sensitive living cochleae using heterodyne low-coherence interferometry and optical coherence tomography. The aim of this short review is to summarize experimental findings on the cochlear active process by the authors' group. Our data show that outer hair cells are able to generate substantial forces for driving the cochlear partition at all audible frequencies in vivo. The acoustically induced reticular lamina vibration is larger and more broadly tuned than the basilar membrane vibration. The reticular lamina and basilar membrane vibrate approximately in opposite directions at low frequencies and in the same direction at the best frequency. The group delay of the reticular lamina is larger than that of the basilar membrane. The magnitude and phase differences between the reticular lamina and basilar membrane vibration are physiologically vulnerable. These results contradict predictions based on the local feedback mechanism but suggest a global hydromechanical mechanism for cochlear amplification. This article is part of the Special Issue Outer hair cell Edited by Joseph Santos-Sacchi and Kumar Navaratnam.


Subject(s)
Cochlea , Hair Cells, Auditory, Outer , Animals , Basilar Membrane/physiology , Cochlea/physiology , Hair Cells, Auditory, Outer/physiology , Mammals , Organ of Corti/physiology , Sound , Vibration
9.
Antonie Van Leeuwenhoek ; 114(12): 2083-2090, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34550493

ABSTRACT

The Gram-stain-negative, strictly aerobic, curved-to-spiral rod-shaped bacterial strain, designated KN72T, was isolated from the Caroline Seamounts in the Pacific Ocean. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain KN72T was a member of the family Rhodospirillaceae and formed a distinct lineage. Strain KN72T contained ubiquinone-10 as the major respiratory quinone. The polar lipid profiles contained phosphatidylethanolamine, phosphatidylglycerol, one aminolipid and three phospholipids. The predominant cellular fatty acids were C16:0 and summed feature 8 (comprising C18:1ω7c/C18:1ω6c). The strain KN72T displayed highest 16S rRNA gene sequence similarities with Hwanghaeella grinnelliae Gri0909T (92.3%), Marivibrio halodurans ZB80T (91.0%) and Aestuariispira insulae AH-MY2T (90.1%). The DNA G+C content of strain KN72T was 61.1%. Collectively, based on phenotypic, chemotaxonomic, phylogenetic and genomic evidence presented, strain KN72T represents a novel species of a novel genus of the family Rhodospirillaceae, for which the name Pacificispira spongiicola gen. nov., sp. nov. is proposed. The type strain is KN72T (= CGMCC 1.17142T = KCTC 72429T).


Subject(s)
Nitrates , Bacterial Typing Techniques , DNA, Bacterial/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodospirillaceae , Sequence Analysis, DNA
10.
Fish Shellfish Immunol ; 118: 51-65, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34474148

ABSTRACT

Long noncoding RNAs (lncRNAs) play important roles in various biological activities as vital regulators. However, no study has focused on the lncRNA regulation of Outer membrane protein (OMP) immunization against aquatic bacterial infection. In this study, we examined the genome-wide expression of lncRNAs in the liver of European eel (Anguilla anguilla, Aa) administrated by a recombinant OmpA (rOmpA) from Edwardsiella anguillarum (Ea) to elucidate the functions of lncRNAs in the process of Ea infection and Aa anti-Ea infection using strand specific RNA-seq. Eels were challenged by Ea at 28 d post the immunization (dpi) of OmpA, and the result showed, compared to uninfected livers in the PBS group (Con group), the infected livers in the PBS group (Con_inf group) showed severe bleeding, hepatocyte atrophy and thrombi formed in the hepatic vessels; livers in the OmpA group (OmpA_inf) also formed slight thrombi in the hepatic vessels. The relative percent survival of eels in OmpA_inf vs Con_inf was 78.6%. Using high-throughput transcriptomics, we found 13405 lncRNAs in 3 compares of Con_inf vs Con, OmpA_inf vs Con and OmpA_inf vs Con_inf, of which 111, 129 and 158 DE-lncRNAs were ascertained. GO analysis of the DE-lncRNAs revealed the targeting DEGs were mainly involved in single-organism process, signaling, biological process and response to stimulus in BP, component of membrane in CC and binding in MF; KEGG pathways showed that the targeting DEGs in co-expression and co-location enriched in cell adhesion molecules. Finally, 54 DE-lncRNAs targeting 1675 DEGs were involved in an interaction network of 21692 co-expression and 483 co-location related links, of which 18 DE-lncRNAs appear to play crucial roles in anti-Ea infection. Thus, the interaction networks revealed crucial DE-lncRNAs underlying the process of Ea infection and Aa anti-Ea infection pre and post the immunization of OmpA.


Subject(s)
Anguilla , Fish Diseases , RNA, Long Noncoding , Aeromonas hydrophila/immunology , Anguilla/immunology , Animals , Edwardsiella , Immunization , RNA-Seq , Transcriptome
11.
Commun Biol ; 4(1): 1008, 2021 08 25.
Article in English | MEDLINE | ID: mdl-34433876

ABSTRACT

Although auditory harmonic distortion has been demonstrated psychophysically in humans and electrophysiologically in experimental animals, the cellular origin of the mechanical harmonic distortion remains unclear. To demonstrate the outer hair cell-generated harmonics within the organ of Corti, we measured sub-nanometer vibrations of the reticular lamina from the apical ends of the outer hair cells in living gerbil cochleae using a custom-built heterodyne low-coherence interferometer. The harmonics in the reticular lamina vibration are significantly larger and have broader spectra and shorter latencies than those in the basilar membrane vibration. The latency of the second harmonic is significantly greater than that of the fundamental at low stimulus frequencies. These data indicate that the mechanical harmonics are generated by the outer hair cells over a broad cochlear region and propagate from the generation sites to their own best-frequency locations.


Subject(s)
Cochlea/physiology , Gerbillinae/physiology , Organ of Corti/physiology , Animals , Biomechanical Phenomena , Hair Cells, Auditory, Outer/physiology , Interferometry , Vibration
12.
Antonie Van Leeuwenhoek ; 114(9): 1399-1406, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34251527

ABSTRACT

Two Gram-stain-positive, facultatively anaerobic, rod-shaped bacterial strains, S126T and S82T, were isolated from coastal algae of China. Strains S126T and S82T are halotolerant and could grow in the presence of 0-13% NaCl and 0-14% NaCl, respectively. The two strains shared 98.9% 16S rRNA gene sequence similarity with each other and 93.4-99.8% similarity with type strains of Exiguobacterium species. The major fatty acids (> 10%) of strains S126T and S82T were iso-C17:0, iso-C13:0, anteiso-C13:0 and iso-C15:0. The predominant quinones of strains S126T and S82T were MK-7 and MK-8. The polar lipid profiles of strain S126T and S82T contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The cell-wall peptidoglycans of both strains S126T and S82T were of the A3α L-Lys-Gly type. The average nucleotide identity (ANI) and average nucleotide index (AAI) between strains S126T and S82T and type strains of Exiguobacterium species were all below the thresholds to discriminate bacterial species, indicating that they constitute two novel species in the genus Exiguobacterium. Based on polyphasic taxonomy characterization and genomic aspects, the names Exiguobacterium algae sp. nov. and Exiguobacterium qingdaonense sp. nov. are proposed for the two novel species, with type strains being S126T (= CGMCC 1.17116T = KCTC 43079 T) and S82T (= CGMCC 1.17115T = KCTC 43078T), respectively.


Subject(s)
Exiguobacterium , Phospholipids , Bacteria , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/analysis , Nucleic Acid Hybridization , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
13.
Curr Microbiol ; 78(5): 2136-2142, 2021 May.
Article in English | MEDLINE | ID: mdl-33811267

ABSTRACT

A Gram-stain-positive, yellow, aerobic, slender rod-shaped bacterial strain, designated KN1116T, was isolated from a deep-sea seamount. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain KN1116T was related to the genus Chryseoglobus and had highest 16S rRNA gene sequence identity with Chryseoglobus frigidaquae CW1T (98.5%). The predominant cellular fatty acids were anteiso-C15:0 and iso-C16:0. The quinone system for strain KN1116T comprised menaquinone MK-12, MK-11, MK-10 and MK-13. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, six unknown glycolipids, two unidentified phospholipids and one unknown polar lipid. The cell-wall peptidoglycan of strain KN1116T was of the type B1ß, containing 2,4-diaminobutyric acid as the diamino acid. Genome sequencing revealed the strain KN1116T has a genome size of 2.7 Mbp and a G+C content of 69.4 mol%. Based on phenotypic, chemotaxonomic, phylogenetic and genomic data, strain KN1116T represents a novel species of a novel genus of the family Microbacteriaceae, for which the name Marinisubtilis pacificus gen. nov., sp. nov. is proposed. The type strain of Marinisubtilis pacificus is KN1116T (=CGMCC 1.17143T =KCTC 49299T).


Subject(s)
Actinomycetales , Actinobacteria , Actinomycetales/genetics , Bacterial Typing Techniques , DNA, Bacterial/genetics , Fatty Acids , Phospholipids , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2
14.
Otol Neurotol ; 42(3): e286-e293, 2021 03 01.
Article in English | MEDLINE | ID: mdl-33555749

ABSTRACT

HYPOTHESIS: Animals with cochlear implantation-induced hearing loss will have a lower endocochlear potential (EP) and decreased strial vascular density. BACKGROUND: The cause of residual hearing loss following cochlear implantation remains poorly understood. Recent work from our lab has shown a correlation between vascular changes in the cochlear lateral wall and postimplantation hearing loss, suggesting a role of the stria vascularis and EP. METHODS: Fourteen young, normal-hearing male albino guinea pigs underwent cochlear implantation using either a cochleostomy (CI-c, n = 9) or an extended round window (CI-eRW, n = 5) approach. Hearing sensitivity was assessed pre- and postoperatively using auditory brainstem response thresholds. Three weeks after implantation, EP measurements were obtained from the first and second turns. Hair cell counts and stria vascularis capillary density measurements were also obtained. RESULTS: The implanted group experienced significant threshold elevations at 8 to 24 kHz (mean threshold shift 9.1 ±â€Š1.1 dB), with a more robust threshold shift observed in the CI-eRW group compared to the CI-c group. Implanted animals had a significantly lower first turn EP (81.4 ±â€Š5.1 mV) compared with controls (87.9 ±â€Š6.1 mV). No differences were observed in the second turn (75.8 ±â€Š12.0 mV for implanted animals compared to 76.5 ±â€Š7.0 mV for controls). There were no significant correlations between turn-specific threshold shifts, EP measurements, or strial blood vessel density. CONCLUSIONS: Reliable EP measurements can be obtained in chronically implanted guinea pigs. Hearing loss after implantation is not explained by changes in strial vascular density or reductions in EP.


Subject(s)
Cochlear Implantation , Hearing Loss , Animals , Cochlea , Guinea Pigs , Hearing , Hearing Loss/etiology , Male , Stria Vascularis
15.
Antonie Van Leeuwenhoek ; 114(3): 303-311, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33548023

ABSTRACT

The Gram-stain-negative, aerobic, ovoid or rod-shaped bacterial strain, designated KN286T, was isolated from seawater of tropical western Pacific. Growth occurred between 15 and 40 °C (optimally at 30-35 °C), pH 6-9 (optimally at 7.0) and in the presence of 0.5-5.0% (w/v) NaCl (optimally between 2.0 and 3.0%). Strain KN286T contained Q-10 as the major respiratory quinone. The polar lipid profile contained phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, three phospholipids, three glycolipids, and three unidentified polar lipids. The predominant cellular fatty acid was summed feature 8 (composed of C18:1ω7c and/or C18:1ω6c). Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain KN286T was a member of the family Rhodobacteraceae and formed a distinct lineage. Strain KN286T has a genome size of 3.25 Mbp and a G + C content of 65.0 mol%. It encoded with some genes for carbohydrate-active enzymes, such as GH20 (Glycoside Hydrolase Family 20) and PL1 (Polysaccharide Lyase Family 1) and did not encode with a set of genes for reduction of nitrate to nitrite (nitrate reductase gamma subunit, respiratory nitrate reductase alpha N-terminal and respiratory nitrate reductase beta C-terminal). Based on phylogenetic analyses with single-copy orthologous clusters, low isDDH value (19.6%), low ANI (72.4%) and low AAI (65.7%) results, differential chemotaxonomic and physiological properties, strain KN286T represents a novel species of a novel genus of the family Rhodobacteraceae, for which the name Oceanomicrobium pacificus gen. nov., sp. nov. is proposed. The type strain of Oceanomicrobium pacificus is KN286T (=CGMCC 1.17118T = KCTC 72430T).


Subject(s)
Rhodobacteraceae , Ubiquinone , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodobacteraceae/genetics , Seawater , Sequence Analysis, DNA
16.
Commun Biol ; 3(1): 35, 2020 01 21.
Article in English | MEDLINE | ID: mdl-31965040

ABSTRACT

It has been demonstrated that isolated auditory sensory cells, outer hair cells, can generate distortion products at low frequencies. It remains unknown, however, whether or not motile outer hair cells are able to generate two-tone distortion at high frequencies in living cochleae under the mechanical loads caused by surounding tissues and fluids. By measuring sub-nanometer vibration directly from the apical ends of outer hair cells using a custom-built heterodyne low-coherence interferometer, here we show outer hair cell-generated two-tone distortion in reticular lamina motion in the living cochlea. Reticular-lamina distortion is significantly greater and occurs at a broader frequency range than that of the basilar membrane. Contrary to expectations, our results indicate that motile outer hair cells are capable of generating two-tone distortion in vivo not only at the locations tuned to primary tones but also at a broad region basal to these locations.


Subject(s)
Acoustic Stimulation , Cochlea/physiology , Hair Cells, Auditory/physiology , Animals , Basilar Membrane/physiology , Female , Gerbillinae , Male , Organ of Corti/physiology , Vibration
17.
Spectrochim Acta A Mol Biomol Spectrosc ; 228: 117839, 2020 Mar 05.
Article in English | MEDLINE | ID: mdl-31812560

ABSTRACT

Camellia oil is one of editable high-quality oils recommended by Food and Agriculture Organization. Thus the method to authenticate camellia oil is significant research. Saponification is one of the simple and inexpensive processes have been used to identify the adulteration in edible oil. At present, the saponification takes a long time, higher temperature and the isolation of unsaponifiables from saponifiables is tedious. In this research, the enriched saponification process has been developed using ultrasonication technique instead of a conventional reflux method. The process has been significantly reduced to 15 min at 55 °C from the regular saponification which need about 2 h by ISO 18609:2000. The special solid phase extraction (SPE) cartridge has been designed and prepared to separate the unsaponifiables, which separates the residual alkaline substance as well as absorbs water in the organic phase in a single cycle. PLS-DA is used to establish model I based on isolated unsaponifiables and model II based on of vegetable oils for identification of camellia oil. The combined FT-IR and chemometrics based on the isolated unsaponifiables was first used to authenticate vegetable oil. Model I had more sensitivity to discriminate adulterated camellia oils by adulterants whose fatty acid compositions similar to camellia oil such as hazelnut oil, soybean oil, corn oil and cheap mixed oil. On the contrary, model II had more sensitivity to discriminate adulterated camellia oils by adulterant whose fatty acid compositions were different from camellia oil such as palm oil. The results concluded that the FT-IR spectroscopy combined with chemometrics based on both isolated unsaponifiables and vegetable oils could be fast and effective to authenticate camellia oil.


Subject(s)
Camellia/chemistry , Food Contamination/analysis , Plant Oils/analysis , Spectroscopy, Fourier Transform Infrared/methods , Discriminant Analysis , Fatty Acids/chemistry , Least-Squares Analysis , Models, Theoretical , Temperature
18.
Elife ; 72018 09 05.
Article in English | MEDLINE | ID: mdl-30183615

ABSTRACT

Auditory sensory outer hair cells are thought to amplify sound-induced basilar membrane vibration through a feedback mechanism to enhance hearing sensitivity. For optimal amplification, the outer hair cell-generated force must act on the basilar membrane at an appropriate time at every cycle. However, the temporal relationship between the outer hair cell-driven reticular lamina vibration and the basilar membrane vibration remains unclear. By measuring sub-nanometer vibrations directly from outer hair cells using a custom-built heterodyne low-coherence interferometer, we demonstrate in living gerbil cochleae that the reticular lamina vibration occurs after, not before, the basilar membrane vibration. Both tone- and click-induced responses indicate that the reticular lamina and basilar membrane vibrate in opposite directions at the cochlear base and they oscillate in phase near the best-frequency location. Our results suggest that outer hair cells enhance hearing sensitivity through a global hydromechanical mechanism, rather than through a local mechanical feedback as commonly supposed.


Subject(s)
Basilar Membrane/physiology , Cochlea/physiology , Gerbillinae/physiology , Vibration , Animals , Female , Male , Postmortem Changes , Sound , Time Factors
19.
Polymers (Basel) ; 10(6)2018 May 23.
Article in English | MEDLINE | ID: mdl-30966605

ABSTRACT

Polydopamine (PDA) displays many striking properties of naturally occurring melanin in optics, electricity, and biocompatibility. Another valuable feature of polydopamine lies in its chemical structure that incorporates many functional groups such as amine, catechol and imine. In this study, a nanocomposite of magnetic Fe3O4@Au@polydopamine nanopaticles (Fe3O4@Au@ PDA MNPs) was synthesized. Carboxyl functionalized Fe3O4@Au nanoparticles (NPs) were successfully embedded in a layer of PDA through dopamine oxypolymerization in alkaline solution. Through the investigation of adsorption behavior to Cu(II), combined with high sensitive electrochemical detection, the as-prepared magnetic nanocomposites (MNPs) have been successfully applied in the separation and analysis of Cu(II). The experimental parameters of temperature, Cu(II) concentration and pH were optimized. Results showed that the as-prepared MNPs can reach saturation adsorption after adsorbing 2 h in neutral environment. Furthermore, the as-prepared MNPs can be easily regenerated by temperature control and exhibits a good selectivity compared to other metal ions. The prepared Fe3O4@Au@PDA MNPs are expected to act as a kind of adsorbent for Cu(II) deep removal from contaminated waters.

20.
Proc Natl Acad Sci U S A ; 113(35): 9910-5, 2016 08 30.
Article in English | MEDLINE | ID: mdl-27516544

ABSTRACT

It is commonly believed that the exceptional sensitivity of mammalian hearing depends on outer hair cells which generate forces for amplifying sound-induced basilar membrane vibrations, yet how cellular forces amplify vibrations is poorly understood. In this study, by measuring subnanometer vibrations directly from the reticular lamina at the apical ends of outer hair cells and from the basilar membrane using a custom-built heterodyne low-coherence interferometer, we demonstrate in living mouse cochleae that the sound-induced reticular lamina vibration is substantially larger than the basilar membrane vibration not only at the best frequency but surprisingly also at low frequencies. The phase relation of reticular lamina to basilar membrane vibration changes with frequency by up to 180 degrees from ∼135 degrees at low frequencies to ∼-45 degrees at the best frequency. The magnitude and phase differences between reticular lamina and basilar membrane vibrations are absent in postmortem cochleae. These results indicate that outer hair cells do not amplify the basilar membrane vibration directly through a local feedback as commonly expected; instead, they actively vibrate the reticular lamina over a broad frequency range. The outer hair cell-driven reticular lamina vibration collaboratively interacts with the basilar membrane traveling wave primarily through the cochlear fluid, which boosts peak responses at the best-frequency location and consequently enhances hearing sensitivity and frequency selectivity.


Subject(s)
Basement Membrane/physiology , Basilar Membrane/physiology , Cochlea/physiology , Hearing/physiology , Acoustic Stimulation/methods , Animals , Cochlea/cytology , Female , Hair Cells, Auditory, Outer/cytology , Hair Cells, Auditory, Outer/physiology , Interferometry/methods , Male , Mechanotransduction, Cellular/physiology , Mice, Inbred CBA , Sound , Vibration
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